References on STRF estimation
1. STRF Calculation
Kenji Suzuki (2004) Determining the receptive field of a neural filter, J. Neural Eng. I: 228-237.
R Prenger, MCK Wu, SV David, JL Gallant (2004). "Nonlinear V1 Responses to Natural Scenes Revealed by Neural Network Analysis", Neural Networks, 17, 663-679.
SV David, WE Vinje, and JL Gallant (2004) "Natural Stimulus Statistics Alter the Receptive Field Structurer of V1 Neurons", Journal of Neuroscience, 24(31):6991-7006.
Nicole C. Rust, Odelia Schwartz, J. Anthony Movshon, Eero Simoncelli (2004) Spike-triggered characterization of excitatory and suppressive stimulus dimensions in monkey V1, Neurocomputing 58-60: 793-799.
B Willmore and D Smyth (2003). "Methods for first-order kernel estimation: simple-cell receptive fields from responses to natural scenes", Network: Comp. Neural Syst. 14, 533-577.
Odelia Schwartz, EJ Chichilnisky, EP Simoncelli (2002) Characterizing neural gain control using spike-triggered covariance, Advances in Neural Information Processing Systems, vol 14:269-276.
Theunissen, F. E., David, S. V., Singh, N. C., Hsu, A., Vinje, W. & Gallant, J. L. (2001) "Estimating spatio-temporal receptive fields of auditory and visual neurons from their responses to natural stimuli," Network: Comp. Neural Syst. 12, 1-28. [Abstract]
Klein, D. J., Depireux , D. A., Simon, J. Z. & Shamma, S. A. (2000) "Robust spectro-temporal reverse correlation for the auditory system: Optimizing stimulus design," J. Comp. Neurosci. 9, 85-111.
Ringach, D. L., Sapiro, G. & Shapley, R. (1997) "A subspace reverse-correlation technique for the study of visual neurons," Vision Res 37, 2455-64.
Kay Steven. (1993) Fundamental of Statistical Signal Processing. Volume 1: Estimation Theory. Prentice Hall Signal Processing Series.
Aertsen, A. M. & Johannesma, P. I. (1981) "The spectro-temporal receptive field. A functional characteristic of auditory neurons," Biol Cybern 42, 133-43.
DeBoer, E. & Kuyper, P. (1968) "Triggered Correlation," IEEE Transactions on Biomedical Engineering 15, 159-179.
2. STRF Validation
Evan Smith, Michael S Lewicki (2005) Efficient Coding of Time-Relative Structure Using Spikes, Neural Computation, 17: 19-45.
A Hsu, SMN Woolley, TE Fremouw and FE Theunissen (2004) Modulation Power and Phase Spectrum of Natural Sounds Enhance Neural Encoding Performed by Single Auditory Neurons, Journal of Neuroscience, 24(41): 9201-9211.
Susanne Still and William Bialek (2004), How Many Clusters? An Information-theoretic Perspective, Neural computation, vol 16, Issue 12:2483-2506.
A Hsu, A Borst and FE Theunissen (2004) "Quantifying variability in neural responses and its application for the validation of model predictions", Network: Comp in Neural systems 15, 1-19.
Michael S. Lewicki (2002) Efficient Coding of Natural Sounds, Nature Neuroscience, vol 5 no 4:356-363.
Maneesh Sahani and Jennifer Linden (2002) "How linear are auditory cortical responses?", NIPS 2002.
Borst A and Theunissen FE (1999), "Information theory and neural coding", Nat. Neurosci. 2 947-57. [Abstract]
William R Softky (1995) Simple codes versus efficient codes, Current Opinion in Neurobiology, 5:239-247.
B Efron, R. Tibshirani (1986) Bootstrap Methods for Standard Errors, Confidence Intervals and Other Measures of Statistical Accuracy, Statistical Science, Vol 1, issue 1: 54-75.
3. General STRF-Related References
Dayan P and Abbott LF, (2001) "Theoretical Neurosciense: Computational and Mathematical Modeling of Neural Systems", The MIT Press, Cambridge, Massachusetts.
Ghazanfar AA, Nicolelis MA.(2001) "Feature article: the structure and function of dynamic cortical and thalamic receptive fields." Cereb Cortex. 2001 Mar;11(3):183-93. Review.
Marmarelis PZ and Marmarelis VZ, (1978) "Analysis of Physiological Systems: The White-Noise Approach", Plenum Press, New York, 1978.
4. STRFs in Audtion (Selected)
JF Linden, RC Liu, M Sahani, CE Schreiner and MM Merzenich (2003) Spectrotemporal Structure of Receptive Fields in Areas AI and AAF of Mouse Auditory Cortex, J Neurophysiol 90:2660-2675.
Klein DJ, Konig P, Kording KP (2003) Sparse Spectrotemporal Coding of Sounds, EURASIP Journal on Applied Signal Processing, 7:659-667.
Escabi MA, Schreiner CE.(2002) Nonlinear spectr-temporal sound analysis by neurons in the auditory midbrain. J Neurosci. 2002 May 15;22(10):4114-31.
Miller LM, Escabi MA, Read HL, Schreiner CE. (2002) Spectrotemporal receptive fields in the lemniscal auditory thalamus and cortex. J Neurophysiol. 2002 Jan;87(1):516-27.
Sen K, Theunissen FE, Doupe AJ.(2001) Feature analysis of natural sounds in the songbird auditory forebrain. J Neurophysiol. 2001 Sep;86(3):1445-58.
Depireux DA, Simon JZ, Klein DJ, Shamma SA. (2001) "Spectro-temporal response field characterization with dynamic ripples in ferret primary auditory cortex", J Neurophysol. 2001 Mar;85(3):1220-34.
Theunissen FE, Sen K, Doupe AJ (2000) "Spectral-temporal receptive fields of nonlinear auditory neurons obtained using natural sounds." J Neurosci. 2000 Mar 15;20(6):2315-31.
Kim PJ, Young ED. (1994) "Comparative analysis of spectro-temporal receptive fields, reverse correlation functions, and frequency tuning curves of auditory-nerve fibers", J Acoust Soc Am. 1994 Jan;95(1):410-22.
Eggermont JJ, Aertsen AM, Johannesma PI. (1983) "Prediction of the responses of auditory neurons in the midbrain of the grass frog based on the spectro-temporal receptie field", Hear Res. 1983 May;10(2):191-202.
5. STRFs in Vision (Selected)
Ringach DL, Hawken MJ, Shapley R (2002) Receptive field struture of neurons in monkey primary visual cortex revealed by stimulation with natural image sequences, J. Vision 2:12-24.
Brian Lau, Garrett B. Stanley and Yang Dan (2002), Computational subunits of visual cortical neurons revealed by artificial neural networks, PNAS Early Edition.
EJ Chichilnisky (2001) A Simple white noise analysis of neuronal light responses, Network: comput. Neural Syst 12:199-213.
Vinje WE, Gallant JL (2000) Sparse coding and decorrelation in primary visual cortex during natural vision, Science 287:1273-1276.
Jones JP, Stepnoski A, Palmer LA (1987), "The two-dimensional spectral structure of simple receptive fields in cat striate cortex", J of Neurophysio 58:1212-1232.
Russell L. De Valois, Duane G. Albrecht and Lisa G. Thorell (1982), Spatial Frequency Selectivity of Cells in Macaque Visual Cortex, Vision Res. Vol 22, 545-559.
6. General STRF Estimation Methods
A. Menchero, RM Diez, D. R. Insua (2005) Bayesian Analysis of Nonlinear Autoregression Models Based on Neural Networks, Neural Computation 17 453-485.
Yoshifusa Ito, Cidambi Srinivasan (2005) Bayesian decision theory on three-layer neural networks, Neurocomputing, 63 209-228.
Sanjay S.P. Rattan, William W. Hsieh (2005), Complex-valued neural networks for nonlinear complex principal component analysis, Neural Networks 18: 61-69.
Su Lee Goh, DP Mandic (2004) A Complex-Valued RTRL Algorithm for Recurrent Neural Networks, Neural Computation 16 2699-2713.
Rameswar Debnath and Haruhisa Takahashi (2004) Analyzing the Behavior of Distribution of Data in the Feature Space of SVM with Gaussian Kernel, Neural Information Processing -letters and reviews, Vo. 5 No 3 pp41-48.
X Liu, LO Hall and KW Bowyer (2004) Comments on "A Parallel Mixture of SVMs for Very Large Scale Problems", Neural Computation 16, 1345-1351.
Allan Gottschalk, Matthew G Sexton and Guilherme Roschke (2004) Multiplicative neural noise can favor an independent components representation of sensory input, Network: Comput Neural Syst. 15, 291-311.
Hyeokho Choi, Justin Romberg, Richard Baraniuk and Nick Kingsbury Hidden Markov Tree Modeling of Complex Wavelet Transforms.
Greg Welch and Gary Bishop (2004) An Introduction to the Kalman Filter.
Liam Paninski (2004) Maximum likelihood estimation of cascade point-process neural encoding models, Network: Comput. Neural Syst. 15 243-262.
Omid S. Jahromi, Bruce A. Francis and Raymond H. Kwong (2003) Spectrum Estimation Using Multirate Observations, IEEE trans. on signal processing.
IW Selesnick and KY Li, Video denoising using 2D and 3D dual-tree complex wavelet transforms.
Nick Kinsbury (1999) Image Processing with Complex Wavelets, Phil. Trans. Soc Lond. A.
IM Johnstone and BW Silverman (1997) Wavelet threshold estimators for data with correlated noise, Journal of the Royal Statistical Society: Series B (Statistical Methodology) vol 59, no 2 pp319-351.
David J.C. Mackay (1992) Bayesian Interpolation, Neural Computation 4, 415-447.
David J.C. Mackay (1992) Probable networks and plausible predictions - a review of practical Bayesian methods for supervised neural networks.